Journal
/
/
Substructure Analyzer: A User-Friendly Workflow for Rapid Exploration and Accurate Analysis of Cellular Bodies in Fluorescence Microscopy Images
JoVE Journal
Bioengineering
Author Produced
A subscription to JoVE is required to view this content.  Sign in or start your free trial.
JoVE Journal Bioengineering
Substructure Analyzer: A User-Friendly Workflow for Rapid Exploration and Accurate Analysis of Cellular Bodies in Fluorescence Microscopy Images
DOI:

14:28 min

July 15, 2020

, , , , , ,

Chapters

  • 00:00Introduction
  • 01:06Download Icy and the “Substructure Analyzer” Protocol on Icy Website
  • 01:30Opening the Protocol
  • 02:03Interacting with the Workflow on Icy
  • 02:49Merging of the Channels of an Image
  • 04:57Segmentation of the Regions of Interest
  • 07:42Fluorescent Signal Detection and Analysis
  • 09:25Run the Protocol
  • 10:35Representative Results
  • 13:48Conclusion

Summary

Automatic Translation

We present a freely available workflow built for rapid exploration and accurate analysis of cellular bodies in specific cell compartments in fluorescence microscopy images. This user-friendly workflow is designed on the open-source software Icy and also uses ImageJ functionalities. The pipeline is affordable without knowledge in image analysis.

Related Videos

Read Article