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JoVE Journal
Chemistry
Glycan Node Analysis: A Bottom-up Approach to Glycomics
Glycan Node Analysis: A Bottom-up Approach to Glycomics
JoVE Journal
Chemistry
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JoVE Journal Chemistry
Glycan Node Analysis: A Bottom-up Approach to Glycomics

Glycan Node Analysis: A Bottom-up Approach to Glycomics

Full Text
11,256 Views
11:36 min
May 22, 2016

DOI: 10.3791/53961-v

Sahba Zaare1, Jesús S. Aguilar1, Yueming Hu1, Shadi Ferdosi1, Chad R. Borges1

1Department of Chemistry & Biochemistry, The Biodesign Institute – Center for Personalized Diagnostics,Arizona State University

This article presents an enhanced form of a novel bottom-up glycomics technique designed to analyze the pooled compositional profile of glycans in unfractionated biofluids through the chemical breakdown of glycans into their constituent linkage-specific monosaccharides for detection by GC-MS. Potential applications include early detection of cancer and other glycan-affective disorders.

The overall goal of this procedure is to break down all glycans in a biological sample while conserving monosaccharide composition and linkage information. Facilitating distillation of interesting glycan features such as sick cyalalation and bisecting N-Acetylglucosamine into single analytical signals. This method can help to directly answer key questions in the field of glycomites such as which unique glycan features are altered in particular disease states.

The main advantage of this technique is that glycan features that tend to be altered in disease such as, beta 1-6 branching and corfulcosulation are distilled into single analytical signals rather than being spread across multiple intact glycans. Generally, individuals need to do this method really struggle with poor yeilds of N-Acetylcysteines due to improper processing of freshly permethylated glycans. Prep the samples, by first transferring nine micro-liters of each biological analyte into separate 1.5 milliliter test tubes.

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