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葡萄全基因组鉴定与表达的综合工作流 E3 泛素连接基因家族的 Meta 分析

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JoVE Journal Biology

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

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葡萄全基因组鉴定与表达的综合工作流 E3 泛素连接基因家族的 Meta 分析

DOI:

10.3791/56626-v

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10:40 min

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December 22, 2017

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Pietro Ariani*¹, Elodie Vandelle*¹, Darren Wong, Alejandro Giorgetti, Andrea Porceddu, Salvatore Camiolo, Annalisa Polverari

¹Dipartimento di Biotecnologie,Università degli Studi di Verona, ²Ecology and Evolution, Research School of Biology,The Australian National University, ³Dipartimento di Agraria, SACEG,Università degli Studi di Sassari

Chapters

00:05Title
01:04Identifying Putative Gene Family Members, Making Alignments, and Sequence Logos
03:33Phylogenetic Analysis and Nomenclature
06:51Tissue Expression Meta-analysis
08:27Results: Identified ATL Gene Family Members in the Grapevine Genome
09:52Conclusion

Summary

Automatic Translation

本文介绍了一个基因家族的鉴定和描述的程序, 适用于在 Levadura 的家庭的葡萄Tóxicos 的拟南芥(ATL) E3 泛素酶。

Tags

Keywords: Genome-wide Identification Expression Meta-analysis ATL E3 Ubiquitin Ligase Gene Family Grapevine Gene Structure Protein Motifs Chromosomal Location Gene Duplications Expression Patterns Gene Family Characterization Protein BLAST PSI-BLAST FASTA Bioinformatics Software

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