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Microelectrode Array Recording of Sinoatrial Node Firing Rate to Identify Intrinsic Cardiac Pacemaking Defects in Mice

doi: 10.3791/62735 Published: July 5, 2021
Praveen Kumar1, Man Si1, Kelsey Paulhus1, Edward Glasscock1


The sinoatrial node (SAN), located in the right atrium, contains the pacemaker cells of the heart, and dysfunction of this region can cause tachycardia or bradycardia. Reliable identification of cardiac pacemaking defects requires the measurement of intrinsic heart rates by largely preventing the influence of the autonomic nervous system, which can mask rate deficits. Traditional methods to analyze intrinsic cardiac pacemaker function include drug-induced autonomic blockade to measure in vivo heart rates, isolated heart recordings to measure intrinsic heart rates, and sinoatrial strip or single-cell patch-clamp recordings of sinoatrial pacemaker cells to measure spontaneous action potential firing rates. However, these more traditional techniques can be technically challenging and difficult to perform. Here, we present a new methodology to measure intrinsic cardiac firing rate by performing microelectrode array (MEA) recordings of whole-mount sinoatrial node preparations from mice. MEAs are composed of multiple microelectrodes arranged in a grid-like pattern for recording in vitro extracellular field potentials. The method described herein has the combined advantage of being relatively faster, simpler, and more precise than previous approaches for recording intrinsic heart rates, while also allowing easy pharmacological interrogation.


The heart is a complex organ governed by both cardiac-intrinsic and extrinsic influences such as those that originate in the brain. The sinoatrial node (SAN) is a defined region in the heart that houses the pacemaker cells (also referred to as sinoatrial cells, or SA cells) responsible for the initiation and perpetuation of the mammalian heartbeat1,2. The intrinsic heart rate is the rate driven by the pacemaker cells without influence by other cardiac or neuro-humoral influences, but traditional measures of heart rate in humans and live animals, such as electrocardiograms, reflect both the pacemaker and neural influences on the heart. The most notable neural influence on SA cells is from the autonomic nervous system, which constantly modulates firing patterns to meet the physiological requirements of the body3. Supporting this idea, both sympathetic and parasympathetic projections can be found near the SAN4. The intrinsic cardiac nervous system (ICNS) is another important neural influence where ganglionated plexi, specifically in the right atria, innervate and regulate the activity of the SAN5,6.

Understanding pacemaking deficits is clinically important, as dysfunction can underlie many cardiac disorders, as well as contribute to the risk of other complications. Sick sinus syndrome (SSS) is a category of diseases characterized by dysfunction of the sinoatrial node which impedes proper pacemaking7,8. SSS can present with sinus bradycardia, sinus pauses, sinus arrest, sinoatrial exit block, and alternating bradyarrythmias and tachyarrhythmias9 and can lead to complications including increased risk of embolic stroke and sudden death8,10. Those with Brugada syndrome, a cardiac disorder marked by ventricular fibrillation with an increased risk of sudden cardiac death, are at greater risk for arrhythmogenic events if they also have comorbid SAN dysfunction11,12. Sinoatrial dysfunction may also have physiological consequences beyond the heart. For example, SSS has been observed to trigger seizures in a patient due to cerebral hypoperfusion13.

To identify sinoatrial pacemaking deficits, intrinsic heart rates need to be determined by measuring the activity of the SAN without the influence of the autonomic nervous system or humoral factors. Clinically, this can be approximated by pharmacological autonomic blockade14, but this same technique can also be applied in mammalian models to study intrinsic cardiac function15,16. While this approach blocks a large portion of contributing neural influences and allows for in vivo cardiac examination, it does not completely eliminate all extrinsic influences on the heart. Another research technique used to study intrinsic cardiac function in animal models is isolated heart recordings using Langendorff-perfused hearts, which typically involve measurements using electrograms, pacing, or epicardial multielectrode arrays17,18,19,20. While this technique is more specific to cardiac function since it involves removing the heart from the body, the measurements may still be influenced by mechano-electric autoregulatory mechanisms that could influence intrinsic heart rate measurements21. The isolated heart recordings may also still be influenced by autonomic regulation through the ICNS5,6,22,23. Furthermore, maintaining a physiologically relevant temperature of the heart, which is critical for cardiac function measurements, can be difficult in isolated heart approaches20. A more direct method to study SAN function is to specifically isolate SAN tissue and measure its activity. This can be accomplished through SAN strips (isolated SAN tissue) or isolated SAN pacemaker cells24,25. Both require a high degree of technical training, as the SAN is a very small and highly defined region, and cell isolation poses an even greater challenge as dissociation can damage the overall health of the cell if not performed correctly. Furthermore, these techniques require expert electrophysiological skills in order to successfully record from the tissue or cells using individual recording microelectrodes.

In this protocol, we describe a technique to record the SAN in vitro by using a microelectrode array (MEA) to obtain intrinsic heart rate measurements. This approach has the advantage of making highly specific electrophysiological recordings accessible to researchers lacking intensive electrophysiological skillsets. MEAs have previously been used to study cardiomyocyte function in primary cardiomyocyte cultures26,27,28,29,30,31,32, cardiac sheets33,34,35,36,37,38,39, and tissue whole mounts40,41,42,43,44,45,46,47. Previous work has also been done to examine field potentials in SAN tissue41,42. Here, we provide a methodology to use the MEA to record and analyze murine intrinsic SAN firing rates. We also describe how this technique can be used to test pharmacological effects of drugs on SAN intrinsic firing rates by providing a sample experiment showing the effects of 4-aminopyridine (4-AP), a voltage-gated K+ channel blocker. Using defined anatomical landmarks, we can accurately record the SAN without having to perform the extensive tissue dissections or cell isolations required in other methods. While the MEA can be cost-prohibitive, the recordings provide highly specific and reliable measures of pacemaking that can be used in a vast array of clinical and physiological research applications.

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All experimental procedures described here have been carried out in accordance with the guidelines of the National Institutes of Health (NIH), as approved by the Institutional Animal Care and Use Committee (IACUC) at Southern Methodist University.

1. Coating the multielectrode array (MEA) for recording

  1. Make 25 mM borate buffer.
    1. Dissolve 0.953 g of Na2B4O7·10 H2O in 80 mL of distilled water.
    2. Adjust the pH to 8.4 with HCl and then add distilled water to a final volume of 100 mL.
  2. Make a 0.1% stock solution of polyethyleneimine (PEI).
    1. Add 100 µL of 50% (w/v) PEI to 4.9 mL of distilled water to make a 1% PEI solution.
    2. Dilute the 1% PEI solution to 0.1% in borate buffer by adding 1 mL of the 1% PEI solution to 9 mL of the 25 mM borate buffer.
  3. Pipette ~1 mL of the 0.1% PEI solution into the microelectrode array (MEA) dish so that the electrodes are completely covered (Figure 1A and 1B).
    NOTE: The microelectrodes of the MEA are typically composed of platinum black or carbon nanotube and insulated with polyimide (or acrylic); both materials are hydrophobic. By coating the MEA with a cationic polymer such as PEI, the hydrophobic MEA surface is made more hydrophilic, allowing tissue samples to make better contact with the MEA surface (Figure 1A1).
  4. Cover the MEA dish with thermoplastic film to reduce evaporation and leave the MEA overnight at room temperature (Figure 1C).
  5. Aspirate the PEI solution from the MEA dish using a pipette, being careful not to touch the electrode grid which can damage the electrodes, and then rinse ≥4 times with distilled water (Figure 1D).
  6. Store the PEI-coated MEA under 1-2 mL of ultrapure water and sealed with thermoplastic film at 4 °C until needed. Alternatively, store the coated MEA by submerging it in a beaker filled with ultrapure water (Figure 1E).
    NOTE: The PEI coating process only needs to be performed once for the MEA before its first use, and after each recording session, the MEA should be stored submerged in ultrapure water.

2. Preparing complete Tyrode's solution for tissue dissection

  1. Make 1,000 mL of complete Tyrode's solution for dissection; first, add 8.1816 g of NaCl to 800 mL of ultrapure water.
  2. Add the following amount of chemicals to the solution: 0.4025 g of KCl; 0.1633 g of KH2PO4; 1.1915 g of HEPES; 0.9999 g of glucose; 0.0952 g of MgCl2; 0.2646 g of CaCl2·2H2O.
  3. Adjust the pH to 7.4 with NaOH and then add ultrapure water until the total volume is 1,000 mL.
    NOTE: The final composition of the Complete Tyrode's solution will be the following (in mM): 140 NaCl, 5.4 KCl, 1.2 KH2PO4, 5 HEPES, 5.55 glucose, 1 MgCl2, 1.8 CaCl2.

3. Preparing oxygenated Tyrode's solution for recording

  1. Make 500 mL of Tyrode's solution; add 4.003 g of NaCl to 400 mL of ultrapure water.
  2. Add the following amounts of chemicals to the solution: 0.651 g of NaHCO3; 0.042 g of NaH2PO4; 0.132 g of CaCl2·2H2O; 0.149 g of KCl; 0.0476 g of MgCl2; 0.999 g of glucose.
  3. Adjust the pH to 7.4 with HCl and then add ultrapure water until the total volume is 500 mL.
  4. Oxygenate the solution with carbogen for at least 30 min at room temperature before starting the recording.
    ​NOTE: The final composition of the Tyrode's solution will be the following (in mM): 137 NaCl, 15.5 NaHCO3, 0.7 NaH2PO4, 1.8 CaCl2, 4 KCl, 1 MgCl2, 11.1 glucose. This Tyrode's solution has a slightly different composition from the Complete Tyrode's solution used for dissection.

4. Preparing 4-aminopyridine (4-AP) solution for pharmacological modulation

  1. Make a 1 mM working solution of 4-AP; add 18.82 mg of 4-AP to 200 mL of the Tyrode's solution from step 3.
  2. Oxygenate the 4-AP solution for at least 30 min before the experiment.

5. Preparing the Petri dish for dissection

  1. Mix silicone elastomer components in a 10:1 ratio (by weight) of the base to curing agent.
  2. Pour ~15 mL of silicone elastomer mixture into a 60 mm diameter Petri dish.
  3. Allow elastomer to cure at room temperature for 48 h before use.
    ​NOTE: The siliconized Petri dish can be reused for future dissections.

6. Dissecting the sinoatrial node (SAN)

  1. Prepare heparinized Complete Tyrode's solution for SAN dissection.
    1. Add 400 µL of heparin (1,000 USP/mL) to 40 mL of Complete Tyrode's solution and warm in a 37 °C water bath.
  2. Inject the mouse intraperitoneally with 200-300 μL of heparin (1000 USP/mL) and allow the animal to sit for 10 min.
  3. Euthanize the heparinized mouse by isoflurane overdose.
    1. Place the mouse in a small glass chamber that contains isoflurane vapors generated by adding 200-300 μL of liquid isoflurane to a filter paper inside a perforated plastic tube.
      NOTE: Because isoflurane can cause skin irritation and can also be absorbed through the skin, the liquid should not contact the mouse directly. Therefore, the isoflurane-soaked wipe is placed in a perforated tube for administration.
    2. Verify death by cessation of movement and breathing effort and by the absence of a toe pinch reflex. Death usually takes about 1-2 min following placement into the chamber.
      NOTE: Death is usually accompanied by urination.
  4. Place the mouse in a supine position on a dissection board with paws outstretched and fix the paws to the board using 1 inch long, 23-gauge syringe needles. Then remove the fur in the vicinity of the bottom of the rib cage by using surgical scissors and cutting the fur at the roots.
    NOTE: For a dissection board, polystyrene cooler lids can be used.
  5. While holding the skin with a hemostat, use surgical scissors to make a transverse incision in the skin just beneath the bottom of the rib cage from about the left costal arch to the right costal arch (Figure 3A).
  6. Cut open the peritoneum with surgical scissors and carefully separate the liver from the diaphragm, being careful not to nick the liver, which will cause excessive bleeding (Figure 3B). Incise the diaphragm along the thorax to expose the thoracic cavity (Figure 3C-D).
  7. Using surgical scissors, cut the lateral walls of the rib cage from the edges of the costal arches up to the clavicles to expose the heart, being careful to avoid damaging the heart (Figure 3D). Then use a 23-gauge syringe needle to pin the rib cage over the shoulder, holding it in place and out of the way of the surgical field.
  8. Use a transfer pipette to drip warm (37 °C) heparinized Complete Tyrode's solution onto the heart to keep it moist.
    NOTE: Do not allow the heart to dry out.
  9. Remove the lungs by holding them with extra fine Graefe forceps and severing the trachea with surgical scissors (Figure 3E).
  10. Hold the apex of the heart with extra fine Graefe forceps and remove it by cutting the aorta and venae cavae with surgical scissors. Transfer the heart to a Petri dish containing cured silicone elastomer (Figure 4A) and use a transfer pipette to bathe the heart with 2-3 mL of warm (37 °C) heparinized Complete Tyrode's solution.
    NOTE: Be careful not to damage the delicate posterior wall of the right atria, which contains the SAN, and the connected right atrial veins. Bathing the heart with Complete Tyrode's solution keeps the heart from drying out but do not fully submerge the heart in solution as it will impair visibility during dissection.
  11. Orient the heart with the right atrium on the experimenter's right and the left atrium on the experimenter's left.
    NOTE: Dissection of the SAN tissue should be done quickly in order to prevent ischemia-related injury.
  12. Attach the apex of the heart to the dish with a dissection pin. Then, while holding the inferior vena cava with Dumont #2 laminectomy forceps, insert a 22 G syringe needle through the inferior and superior vena cava to locate their position in the right atrium, which also identifies the approximate position of the SAN (located in the patch of tissue between the inferior and superior vena cava (Figure 4B).
  13. Using small dissection pins, pin the left and right atrial appendages to the dish.
    1. While holding the left atrial appendage with Dumont #2 laminectomy forceps, put a dissection pin through the left atrial appendage to hold it in place.
    2. While holding the right atrial appendage with Dumont #55 forceps, put a dissection pin through the right atrial appendage to hold it in place.
      NOTE: The same type of forceps can be used to hold the left and right atrial appendages if desired.
  14. Remove the syringe needle that spans the venae cavae.
  15. To release blood from the heart, use Castroviejo scissors to remove the apex of the heart (i.e., the bottom half) by making a transverse incision across the ventricles (Figure 4C). Then, wash the heart by adding warm (37 °C) heparinized Complete Tyrode's solution with a transfer pipette.
  16. Use Castroviejo scissors to cut along the atrioventricular septum keeping the incision closer to the ventricle than the atria. Continue cutting along the atrioventricular septum until the atria are separated from the ventricles.
  17. Cut along the interatrial septum to remove the left atrium.
  18. Place dissection pins in the periphery of the right atrium to make it lay flat (Figure 4D). Remove any remaining fat, vessels, or tissue from the atrium using the Castroviejo scissors.
  19. Locate the SAN in the right atrium, which in this orientation is approximately bordered by the superior vena cava (on the top), inferior vena cava (on the bottom), and cristae terminalis (on the left) (Figure 4D).
    ​NOTE: The crista terminalis appears as a dark muscular ridge between the right atrial appendage and the SAN. Often the SAN artery can also be seen coursing through the SAN (Figure 4D).

7. Preparing the MEA system for recording

  1. Add Tyrode's solution (from step 3) to the input solution bottle (Figure 5C) and oxygenate it by turning on the flow of carbogen gas (Figure 5A) to the system.
    NOTE: The Tyrode's solution used for the recording is slightly different in composition from the Complete Tyrode's solution used for the dissection.
  2. Verify the flow of carbogen by observing bubbles in the conical flask, which is used to humidify the gas (Figure 5B), and the input solution bottle (Figure 5C) .
  3. Insert the peristaltic pump inflow tubing (Figure 5D) into the Tyrode's recording solution (Figure 5C). Then, insert the peristaltic pump outflow tubing into the collection bottle (Figure 5I).
  4. Set the peristaltic pump to 25 rpm, which gives a flow rate of 2 mL/min and start the pump. Check the system for any buffer leakage or overflow.
  5. Set the temperature controller to 37 °C, the physiological temperature of mice (Figure 5E).

8. Placing the heart tissue on the MEA grid

  1. Transfer the dissected SAN tissue with the help of a paint brush (Figure 6A) from the dissecting Petri dish onto the MEA grid (Figure 1A1).
    1. While looking under an inverted microscope, gently position the tissue with a soft paint brush so that the SAN region overlays the electrode grid.
    2. Re-position the tissue as necessary to ensure it lays flat on the electrode grid, making good contact with the electrodes.
      NOTE: A soft paint brush is required for moving the tissue to avoid damaging the electrode grid.
  2. Once the tissue is correctly positioned, use bone forceps (or any curved forceps) to place the mesh over the tissue (Figure 6A) . Then use the bone forceps to place the harp anchor (Figure 6A) on the mesh to hold everything in place (Figure 6B).
  3. Take a picture of the positioning of the tissue on the MEA so that the activity of individual electrodes can be correlated with their anatomical location during the recording. This can be done by holding a smartphone up to the inverted microscope objective or by using an attached microscope camera.
    NOTE: If the orientation of the MEA is not changed after taking the picture, the top left electrode will appear as the first channel (Ch1) during recording.
  4. Place the MEA dish on the connector plate (Figure 5F and 6C) and carefully place the perfusion cap (Figure 6C) on the MEA dish without disturbing the harp slice anchor. The perfusion cap can be further secured using a piece of lab tape (Figure 6C).
    NOTE: In addition to having adjustable solution inflow and outflow pipes, the cap also has a port for the delivery of gas (Figure 6C). In addition, the reference electrode ring runs through the cap (Figure 6C).
  5. Allow the tissue to recover from handling and to acclimate to the chamber for 15-20 min prior to recording.

9. Setting the data acquisition protocol for recording

NOTE: The following steps describe opening the software protocol for spontaneous beat recording and defining the recording conditions. The specifics of these steps may vary depending on the specific software being used, but the general outline should remain the same.

  1. Turn on the amplifier (Figure 5G), and set up a workflow for the recording in the software on the computer (Figure 5H).
    1. Open the software and click on the Workflow.
    2. Select Open New Folder.
    3. Open the From Templates folder.
    4. Select 64MD1-1920X1080 (depending on the resolution of your desktop).
    5. Open the QT folder.
    6. Open the Spontaneous recording folder.
    7. Select Beat_recording.moflo template and open it (Figure 7A).
  2. Set the recording parameters to specify the number of traces, trace duration, trace interval, input voltage, sampling rate, etc., according to the desired recording conditions (Figure 7B).
    NOTE: For beat frequency and interspike data acquisition, typically use an input range voltage of 2.9 mV, a 1-Hz high pass filter, a 1000-Hz low pass filter, and a sampling rate of 20 kHz.
  3. To mark different phases or conditions of the experiment, such as before and after drug administration, click on the Annotations tab to add the desired notations (Figure 7C).
  4. To specify the file destination for the data to be collected, select the Enable Storage box and enter the desired file name in the File name modifier box.

10. Performing the recording and collecting data

  1. Click the Record and Play button on the topmost menu bar of the acquisition software to start the recording. Acquire data for 10 traces of 1 min duration with intervals of 2 min between traces.
  2. From these initial traces, verify that the recorded waveforms are consistent with a healthy and high-quality tissue preparation by confirming that the majority of the recording channels exhibit signal amplitudes of ≥ 0.5 mV and identical inter-spike intervals (Figure 8).
    NOTE: An initial assessment of the activity and waveforms of the individual microelectrodes corresponding to their anatomical locations can be performed by referencing the picture acquired after positioning the tissue on the MEA.
  3. To measure the effects of drugs on the tissue, pause the recording after acquiring initial baseline data by clicking the pause button on the topmost menu bar.
    NOTE: The drug response phase of the experiment can be notated in the recording by clicking on the Annotations tab and adding the desired notation as described above (Figure 7C).
  4. Pause the pump and switch the pump inflow tubing from the normal recording solution to Tyrode's solution containing the desired drug of choice.
    NOTE: In the example experiment, Tyrode's solution was used with 1 mM 4-aminopyridine (4-AP).
  5. Restart the pump and un-pause the recording to begin collecting data again.
  6. Once the drug-infused Tyrode's solution has reached the tissue, record 10 traces in the same manner as done previously for the baseline recordings.
    NOTE: The traces will take some time to stabilize as the drug infuses into the recording chamber. The mechanism of action of the drug may also affect recording stability. For drugs that have reversible mechanisms of action, a washout period should also be recorded to confirm restoration of activity to baseline levels, which is an indicator of healthy tissue.
  7. Click Stop to conclude the recordings.
  8. Take a final picture of the positioning of the tissue on the MEA under the microscope in case the tissue has shifted following the initial recording setup procedure.

11. Cleaning the setup after the recording

  1. Clean the MEA.
    1. After finishing recording, gently remove the recording solution from the MEA dish using a 1 mL micropipette.
      NOTE: Be careful not to contact the MEA electrodes which can damage them.
    2. Remove the mesh and harp anchor with bone forceps (or any curved forceps). Then use a paint brush to dislodge the tissue from the MEA surface always being careful not to touch the individual microelectrodes.
    3. Using a wash bottle, gently rinse the MEA dish with ultrapure water about 3 to 4 times.
    4. Store the cleaned MEA immersed in ultrapure water at 4 °C.
  2. Rinse the system tubing by running ultrapure water through it for at least 5 min using the maximum speed setting on the peristaltic pump.
    ​NOTE: To prevent fungal growth, no water or buffer solution should be left inside the tubing after cleaning.

12. Analyzing the MEA recordings to measure SAN beat frequency

  1. Open the saved recorded data file in the "Beat_frequency_analysis" template of the analysis software (Figure 9) .
  2. Click on the Play button and allow the entire recording to run to visualize the data set and assign appropriate analysis parameters.
    1. Select the binning window for the desired display format of the data, whether it is displayed as an average per trace or average per time (Figure 10A).
    2. Select the channels to be included in the analysis and set the desired amplitude maxima or amplitude minima threshold values for automated waveform peak identification (Figure 10B).
      NOTE: An individual channel, a combination of channels, or all 64 channels can be selected for analysis at this step (Figure 9). If the threshold values selected are too close to the waveform's maxima and minima values, some waveform peaks may not be identified by the analysis software.
    3. Set the amount of pre-spike and post-spike time to be included in the analysis.
      NOTE: Settings of 50 ms pre-spike and 100 ms post-spike usually work well (Figure 10B).
  3. After setting the analysis conditions, click on the Play button again to rerun the data set and confirm that the analysis parameters are appropriate for spike extraction.
  4. For analysis, identify the three most stable consecutive traces that exhibit stable beating rate for each trace across the majority of channels both during the baseline period of the experiment and another three consecutive stable traces during the drug exposure period (Figure 10A).
  5. Specify the start and end traces for analysis and enter the time duration of each trace to be analyzed (Figure 9).
  6. Before starting the analysis, select the enable boxes for both Save beat per minute and Save interspike interval (Figure 10B).
  7. Enter the desired file name in the File name modifier box (Figure 10B). The analyzed data for beat frequency and interspike interval will be saved in the form of ASCII (text) format.
    NOTE: To analyze different conditions (such as baseline and drug response), analysis must be run separately for each condition.
  8. Click the Play and Record button on the top tab bar to start the analysis.
  9. To export the data for other applications, select the boxes for Save beat per minute and Save interspike interval (Figure 10B). Enter the desired file name in the File name modifier box (Figure 10B) and click Save to save the analyzed data in ASCII text format in the selected folder.

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Representative Results

After allowing the tissue to acclimate in the dish for 15 min, 10 one-min traces are recorded. Our current protocol records activity for over an hour, but we have recorded stable firing patterns for ≥4 h in unpublished data not shown here. If an experimental preparation is good for data collection, each recording channel should exhibit consistent and evenly spaced recurring waveforms (i.e., spikes) of uniform shape for a given channel (Figure 11D). These waveforms correspond to individual heart beats that reflect intrinsic cardiac pacemaking activity. The interspike intervals should be the same for every channel even if they may not be perfectly aligned across channels due to small differences in their location relative to the initiation site of depolarization (Figure 8). Although the shape of the waveforms for a given channel should be consistent, the shape of the waveforms will vary across channels depending on the location of the electrode in the tissue (Figure 8). The degree of contact of the tissue with the electrode may also influence waveform characteristics, such as the amplitude. However, the amplitude maxima should be at least 0.5 mV for the majority of channels if the preparation is satisfactory. From the 10 recorded traces, the three consecutive channels that best meet the quality criteria described above were chosen for further analysis described below. Figure 10A shows a sample of stable beat frequency (top panel) and interspike interval (middle panel) for three consecutive traces. Tissue that does not meet these criteria should not be recorded as there is likely tissue damage that will hinder accurate data collection. Figure 11 shows examples of bad extracted spike patterns which are either absent (A), influenced by noise (B), or unstable (C).

The sample data displayed in the figures was collected from a 45-day old male wildtype Black Swiss (Tac:N:NIHS-BC) mouse. The analysis procedure depicted in Figure 9 and Figure 10 was used to extract the intrinsic firing rate and display baseline spikes that can be seen in Figure 12A. The firing rate is the average rate across 60,000 ms from each of the three traces, but the spike pattern in Figure 12A shows 5 s of representative spiking from a single trace. Using automated analysis software, the intrinsic firing rate (i.e., beat frequency) of the selected three traces across all 64 channels was found to be approximately 320 bpm in our sample data (Figure 12A). In general, we observe a range of values of about 290-340 bpm in our recordings for wildtype mice. The firing rate can also be used as a secondary method to assess preparation quality. Rates that are either unstable or significantly lower than 300 bpm are less likely to be good for analysis. These values are comparable to both isolated heart and single cell recordings which report intrinsic heart rates in the range of approximately 300-500 bpm25,48,49. Therefore, the MEA recording technique is capable of generating reliable and accurate measures of intrinsic heart rate.

An advantage of the MEA system is that it allows easy application of drug agents to test pharmacological effects. In the sample experiment, we tested the effects of 1 mM 4-AP on firing rate, which should slow SAN activity since blockade of voltage-gated K+ channels is known to impair action potential repolarization in SA cells24,50. Figure 12B shows that the introduction of 4-AP increased the interspike intervals as expected. This prolonged spike interval corresponded to a decrease in the beat frequency from 320 bpm to 210 bpm. This firing rate following 4-AP administration is similar to a previous study that examined the effects of 4-AP on SAN firing rate using single electrode recordings of isolated tissue. That study measured a firing rate of approximately 190 bpm in the presence of 4-AP50. Thus, the MEA system can be used as a convenient and valuable tool for testing pharmacological effects of drug interventions on intrinsic cardiac function.

Figure 1
Figure 1: Coating the microelectrode array (MEA) prior to use. (A) The MEA is composed of a small plastic dish with a grid array of 64 microelectrodes in the center (as shown in the panel A1) and four reference electrodes around the periphery in a square pattern. (B) Addition of 1 mL of PEI buffer to coat the MEA. (C) Covering the MEA dish with thermoplastic film for incubation overnight at room temperature. (D) Aspirating the PEI buffer from the MEA dish, which is followed by at least four rinses with distilled water. (E) Storing the coated MEA probe under ultrapure water to prevent it from drying out. Please click here to view a larger version of this figure.

Figure 2
Figure 2: Tools used for sinoatrial node (SAN) dissection. The following tools are used during the dissection part of the protocol: (i) Petri dish with silicone elastomer and small dissection pins; (ii) Plastic transfer pipette; (iii) Castroviejo scissor, size 4"; (iv) Surgical scissors (straight) for cutting procedures; (v) Dumont #2 Laminectomy forceps; (vi) Dumont #55 forceps; (vii) Extra fine Graefe forceps; (viii) Hemostats (curved). Please click here to view a larger version of this figure.

Figure 3
Figure 3: Removal of the heart. (A) Transverse incision in the skin just beneath the bottom of the rib cage from about the left costal arch to the right costal arch. (B) Peritoneal incision. (C,D) Incision of the diaphragm along the thorax to expose the thoracic cavity. (E) Removal of the heart following excision of the lungs. Please click here to view a larger version of this figure.

Figure 4
Figure 4: Dissection of the sinoatrial (SAN) node. (A) The appearance of the heart in the Petri dish following removal from the body. (B) Insertion of the syringe needle through the inferior vena cava (IVC) and superior vena cava (SVC) of the right atrium. The pin in the apex of the heart is also shown. (C) Excision of the apex (i.e., the bottom half) of the heart to release the blood. The pins in the atrial appendages are also shown. (D) The final appearance of the SAN region of the right atrium at the end of dissection. The boxed region corresponds to the approximate location of the SAN. The SAN artery can also be faintly seen coursing through the SAN in a vertical orientation. The Abbreviations: AO, aorta; CT, crista terminalis; IVC, inferior vena cava; LA, left atrium; RA, right atrium; RAA, right atrial appendage; SAN, sinoatrial node; SVC, superior vena cava. Please click here to view a larger version of this figure.

Figure 5
Figure 5: Schematic of the microelectrode array (MEA) recording system setup. The following components comprise the system: (A) gas cylinder (carbogen: 95% O2/ 5% CO2); (B) conical flask with distilled water to humidify the gas; (C) recording Tyrode's solution bottle that provides inflow to the MEA dish; (D) peristaltic pump to pump solution to and from the MEA dish; (E) temperature regulator; (F) MEA connector plate which receives signals from the MEA dish; (G) amplifier; (H) computer; (I) collection bottle for used waste solution from the MEA dish. Please click here to view a larger version of this figure.

Figure 6
Figure 6: Positioning of the SA nodal tissue on MEA. (A) Tools used in positioning the tissue: (i) Mesh with 1.5-mm grid size, (ii) harp anchor, (iii) bone forceps, (iv) paint brush. (B) Positioning of the tissue on the MEA. The yellow box indicates the approximate area of the sinoatrial node region under the mesh and anchor in the MEA dish. (C) Arrangement of the MEA dish with enclosed tissue on the connector plate for field potential recording: (i) inlet for the recording solution; (ii) inlet for gas (carbogen); (iii) outlet for the solution; (iv) microelectrode connector plate; (v) perfusion cap; (vi) reference electrode ring attached to the cap; (vii) tape to hold the cap. Please click here to view a larger version of this figure.

Figure 7
Figure 7: Setting the data acquisition protocol in the software. (A) An example of recording template showing arrangement of all 64 channels. (B) An example of the software input properties for the recording conditions. (C) An example of the Annotations menu showing how to Add New Phase during the recording, such as for measuring drug effects. Please click here to view a larger version of this figure.

Figure 8
Figure 8: Different regions of the tissues showing different activity waveforms. Example screen shot showing waveforms with different shapes and amplitudes in different channels. However, all channels show identical interspike intervals and firing frequencies. The channels within the red box correspond approximately to the electrodes placed within the SAN region of the tissue. Please click here to view a larger version of this figure.

Figure 9
Figure 9: Beat frequency analysis template. Example template showing arrangement of all 64 channels in beat frequency analysis template. The Replay Raw Data File inset shows an example of the input properties of the analysis window. In this example, traces 5 to 7 have been selected for analysis and the duration of analysis for each trace has been designated as 60,000 ms. Please click here to view a larger version of this figure.

Figure 10
Figure 10: Defining analysis parameters for spike extraction. (A) Representative analysis template results for 3 selected traces of a single channel. The top panel displays beat frequency for the three selected traces (three defined groupings of data points), and each point represents a 10-s average for beat frequency during the specific trace. The middle panel displays inter-spike interval for the three selected traces (three defined groupings of data points), and each data point represents the inter-spike interval between two consecutive spikes. The lower left panel shows selected representative extracted spikes for the last 5 s of the third trace, whereas the lower right panel shows an extracted waveform derived from the 5-s group of extracted spikes in the lower left panel. (B) Expanded view of the analysis window showing parameters used in the analysis of beating frequency for the 3 traces. Please click here to view a larger version of this figure.

Figure 11
Figure 11: Representative figure showing good versus bad data extraction for a particular channel. Bad data extraction: (A) Absence of extracted spikes; (B) Extracted spikes with noise signals; (C) Unstable extracted spikes. (D) Good data showing stable extracted spikes without noise signals. Please click here to view a larger version of this figure.

Figure 12
Figure 12: Recordings at baseline and after administration of 1mM 4-Aminopyridine (4-AP). (A) Baseline recording from a single microelectrode shows waveforms with a stable firing frequency of 320 bpm in a WT heart. (B) Following administration of 4-AP, the firing frequency slows to a stable rate of 210 bpm. Please click here to view a larger version of this figure.

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Practicing and mastering the SAN dissection process is imperative since the tissue is fragile and healthy tissue is necessary for a successful recording. During the SAN dissection, correct orientation is essential to obtain the proper region of tissue. However, the original orientation of the heart can be easily lost during the dissection process, which complicates this endeavor. Therefore, to ensure the proper left-right orientation, the atria should be visually inspected. Typically, the right atrium tends to be more transparent, whereas the left atrium is usually darker and more red in color25,48. Furthermore, it is essential not to stretch the SAN tissue while working with it or mounting it onto the electrode grid, as the tissue is easily mechanically damaged51. A tip to verify healthy and properly dissected SAN tissue is to examine it in Complete Tyrode's solution under the microscope to verify that the tissue is beating. Once the technique is mastered, at least 90% of tissue preparations should be good for recording.

Several considerations can improve the likelihood of successful recordings and subsequent data analysis. To ensure the best recordings, solutions should be carefully prepared and tested on practice mouse samples prior to experimental recordings. We worked extensively to adapt and modify the recording solution to optimize the health of the SAN tissue. Additionally, ensure that the gas used for the recording is carbogen (i.e., 95% O2/5% CO2). Single cell recordings often use pure oxygen due to the specific chemical composition of the Tyrode's solution used for that application, but the solution used for recording on the MEA requires carbogen in order to maintain a stable pH. Using pure oxygen with the Tyrode's solution for the MEA recordings will cause fluctuations in the pH which can lead to rapid deterioration of the tissue. Assessing the amplitude maxima in the channels as previously described will help determine if the tissue is of good recording quality. Finally, to aid analysis after the recording, taking an image of the mounted SAN tissue on the MEA electrode array after the recording is finished is very helpful. The tissue can shift slightly during the initial set up of the MEA, and this provides the most accurate assessment of electrode placement for analysis.

We propose MEA recordings as a thorough and accurate way to characterize SAN firing rate. An advantage of the MEA technique is that it allows the experimenter to capture firing rates on par with single cell recordings without the need to have extensive electrophysiological expertise. The MEA technique also has the advantage of eliminating the potential confounding influences of neurohumoral and mechano-electric mechanisms, which are inherent in isolated heart recordings and in vivo autonomic blockade measurements21. Ventricular contraction and respiration are the main mechano-electric influences that could alter SAN firing, but they are eliminated in our tissue preparation 52,53. While our technique eliminates most of the autonomic influences on the SAN, a limited number of remaining ICNS projections in the right atria could potentially impact SAN firing, a theoretical limitation which should be kept in mind during the interpretation of results5,6,22,23. Another advantage of the MEA technique described here is that it can be adapted for many other types of cardiac studies. For example, although this protocol demonstrated the effects of 4-AP on SAN activity, future studies could look at an almost limitless number of pharmacological agents, as well as the effects of gene mutations on SAN intrinsic firing. For example, ivabradine, a specific blocker of the SAN-specific Hcn4 channel, could be used to study funny current contributions to the firing rate54. The MEA system can also be used to measure cardiac function in other regions of the heart, allowing for detailed, region-specific characterization. However, recording from other heart regions would require different dissection approaches and the possibility of thin tissue sectioning before recording. One potentially significant limitation of this technique is the high cost of purchasing an MEA system which can be prohibitive. Several MEA systems are available on the market with similar characteristics and functionality, but the high cost remains the same. However, once the initial equipment and software is acquired, the cost to maintain and use the MEA system is fairly low. Another limitation is that the MEA system only allows recording of extracellular field potentials which are not conducive to precise comparisons of action potential characteristics (e.g., amplitude and shape) between preparations such as can be attained with single cell intracellular recordings. In summary, this protocol provides an efficient workflow to measure and analyze intrinsic cardiac firing rates in mouse SAN tissue with the ability to study the effects of pharmacological intervention on firing rate in a highly specific manner.

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The authors have nothing to disclose.


This work was funded by the National Institutes of Health, grant numbers R01NS100954 and R01NS099188.


Name Company Catalog Number Comments
4-Aminopyridine Sigma A78403-25G
22 gauge syringe needle Fisher Scientific 14-826-5A Used for dissection
23 gauge syringe needle Fisher Scientific 14-826-6C Used for dissection
60mm Petri Dishes Genesee Scientific 32-105G
500mL Pyrex Bottle Fisher Scientific 06-414-1C Used to store solutions
1000 mL Pyrex Bottle Fisher Scientific 06-414-1D Used to store solutions
Bone Forceps Fine Science Tools 16060-11
Calcium chloride dihydrate (CaCl2·2H2O) Sigma-Aldrich C5080-500G
Carbogen (95% O2, 5% CO2)
Castroviejo Scissors, 4" Fine Science Tools 15024-10
D-(+)-Glucose Sigma-Aldrich G7021-1KG
Data Acquisition PC CPU: Intel Xeon or Intel Core i7, Memory: 8GB, HDD: 1TB, Graphic Card: NVIDIA or On-board, Screen: 1920x1080
Dissection Microscope Jenco
Dissecting Pins Fine Science Tools 26002-20
Dumont #2 Laminectomy Forceps Fine Science Tools 11223-20
Dumont #55 Forceps Fine Science Tools 11295-51
 Extra Fine Graefe Forceps Fine Science Tools 11152-10
Glass Chamber Grainger 49WF30 Used for mouse euthanization
Harp Anchor Kit Warner Instruments  SHD-22CL/15 WI 64-0247
HCl Fisher Chemicals SA48-4 Used for pH balancing
Hemostat Fine Science Tools 13013-14
Heparin Aurobindo Pharma Limited IDA, Pashamylaram NDC 63739-953-25
HEPES Sigma-Aldrich H3375-250G
Inverted Microscope Motic AE2000
Isoflurane Patterson Veterinary 07-893-1389
Lab Tape Fisher Scientific 15-950
Light for Dissection Microscope Dolan-Jenner MI150DG 660000391014
Magesium chloride (MgCl2) Sigma-Aldrich 208337-100G
MED64 Head Amplifier MED64 MED-A64HE1S
MED64 Main Amplifier MED64 MED-A64MD1A
MED64 Perfusion Cap MED64 MED-KCAP01
MED64 Perfusion Pipe Holder Kit MED64 MED-KPK02
MED64 ThermoConnector MED64 MED-CP04
Mesh  Warner Instruments 640246
Microelectrode array (MEA) Alpha Med Scientific MED-R515A
Mobius Software WitWerx Inc. Specific software for the MED64
NaOH Fisher Chemicals S320-500 Used for pH balancing
Normal Saline Ultigiene NDC 50989-885-17
Paint Brush Fisher Scientific NC1751733
Parafilm Genesee Scientific PM-996
Peristaltic Pump Gilson F155009
Peristaltic Pump Tubing Fisher Scientific 14-171-298 1/8'' Interior Diameter
Polyethyleneimine Sigma P3143
Potassium chloride (KCl) Sigma-Aldrich P9333-500G
Potassium phosphate monobasic (KH2PO4) Sigma-Aldrich P5655-500G
Sodium Bicarbonate Sigma S6297
Sodium chloride (NaCl) Fisher Scientific S671-3
Sylgruard Elastomer Kit Dow Corning 184 SIL ELAST KIT 0.5KG
Sodium Phosphate Monobasic Sigma S6566
Sodium tetraborate Sigma S9640
Surgical Scissors Fine Science Tools 14074-09
Transfer Pipets (3mL graduated) Samco Scientific 225



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Cite this Article

Kumar, P., Si, M., Paulhus, K., Glasscock, E. Microelectrode Array Recording of Sinoatrial Node Firing Rate to Identify Intrinsic Cardiac Pacemaking Defects in Mice. J. Vis. Exp. (173), e62735, doi:10.3791/62735 (2021).More

Kumar, P., Si, M., Paulhus, K., Glasscock, E. Microelectrode Array Recording of Sinoatrial Node Firing Rate to Identify Intrinsic Cardiac Pacemaking Defects in Mice. J. Vis. Exp. (173), e62735, doi:10.3791/62735 (2021).

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